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dephosphorylation buffer  (New England Biolabs)


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    New England Biolabs dephosphorylation buffer
    Dephosphorylation Buffer, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 99/100, based on 11283 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/dephosphorylation+buffer/T4+Polynucleotide+Kinase/pmc12603922-366-16-14
    Average 99 stars, based on 11283 article reviews
    dephosphorylation buffer - by Bioz Stars, 2026-09
    99/100 stars

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    Related Articles

    Incubation:

    Article Title: Multivalent coiled-coil interactions enable full-scale centrosome assembly and strength
    Article Snippet: .. Ni-NTA-bound SPD-5 was incubated for 1 h at room temperature in dephosphorylation buffer (1× PMP buffer (NEB) + 1 mM MnCl 2 ), + 40,000 U lambda phosphatase (400,000 U/ml, NEB). ..

    Article Title: Rational Design of Phosphorylation-Responsive Coiled Coil-Peptide Assemblies
    Article Snippet: .. Following this, MnCl 2 , to a final concentration of 1 mM (dephosphorylation buffer), and then 2 U/μL Lambda Protein Phosphatase (LPP) (NEB) were added, and the sample was incubated at 37 °C for up to 1 h. Peptide dephosphorylation was again monitored by recording the CD signal at 222 nm against time, with time points taken every second for the duration of the reaction. ..

    Article Title: Multivalent coiled-coil interactions enable full-scale centrosome assembly and strength
    Article Snippet: .. Ni-NTA-bound SPD-5 was incubated for 1 hr at room temperature in dephosphorylation buffer (1X PMP buffer (NEB) + 1mM MnCl 2 , + 40,000 U of lambda phosphatase (400,000 units/mL, NEB). ..

    Article Title: Cell cycle-specific loading of condensin I is regulated by the N-terminal tail of its kleisin subunit
    Article Snippet: .. The washed beads were incubated with 10 μl of dephosphorylation buffer (1× NEB buffer for PMP supplemented with 1 mM MnCl 2 ) with or without 100U λProtein Phosphatase (P0753S, λPPase) (New England Biolabs). ..

    De-Phosphorylation Assay:

    Article Title: Multivalent coiled-coil interactions enable full-scale centrosome assembly and strength
    Article Snippet: .. Ni-NTA-bound SPD-5 was incubated for 1 h at room temperature in dephosphorylation buffer (1× PMP buffer (NEB) + 1 mM MnCl 2 ), + 40,000 U lambda phosphatase (400,000 U/ml, NEB). ..

    Article Title: Polyglycine-mediated aggregation of FAM98B disrupts tRNA processing in GGC repeat disorders
    Article Snippet: .. 2.5 μg of total RNA was dephosphorylated with 10 units of T4 polynucleotide kinase (NEB) in dephosphorylation buffer (700 mM bis-tris, 100 mM MgCl 2 , 50 mM DTT, pH 6) at 37°C for 30 minutes, then fractionated using an RNA Clean & Concentrator-5 kit (Zymo) according to the manufacturer’s instructions. cDNA was synthesized from 20 ng of the small RNA fraction using an OTTR kit (Karnateq) according to the manufacturer’s instructions. .. Following cDNA synthesis, reactions were combined with 1 μL RNase A (ThermoScientific) and 1 μL thermostable RNase H (NEB), incubated at 50°C for 10 minutes, further combined with 1 μL proteinase K (NEB) and 30 μL cDNA stop solution (50 mM tris-HCl, 20 mM EDTA, 0.1% SDS, pH 7.4), incubated at 50°C for 10 minutes, and denatured at 95°C for 5 minutes. cDNA was purified using an Oligo Clean & Concentrator kit (Zymo), mixed 1:1 with 2X Gel Loading Buffer II (Ambion) and subjected to denaturing 8% polyacrylamide gel electrophoresis.

    Article Title: Digenic inheritance involving a muscle-specific protein kinase and the giant titin protein causes a skeletal muscle myopathy
    Article Snippet: The cells were lysed for 15 min on ice in 1× NEBuffer Pack for Protein Metallophosphatases (50 mM HEPES (pH 7.5), 100 mM NaCl, 2 mM DTT, 0.01% Brij 35; New England Biolabs) supplemented with 1 mM MnCl 2 , 1% Triton X-100, 1× Halt Protease Inhibitor Cocktail (Thermo Fisher Scientific), 4 mM β-glycerophosphate, 10 mM sodium pyrophosphate, 4 mM sodium orthovanadate and 2 mM sodium fluoride. .. Insoluble material was pelleted at 4 °C for 15 min at 15,700 g . The supernatants were divided into three reactions (U, untreated; N, no phosphatase; P, phosphatase) and combined 1:1 with dephosphorylation buffer (1× NEBuffer pack for protein metallophosphatases, 1 mM MnCl 2 ) alone (U, N) or with NEB lambda protein phosphatase (P; final concentration 6,667 units ml −1 ). ..

    Article Title: Rational Design of Phosphorylation-Responsive Coiled Coil-Peptide Assemblies
    Article Snippet: .. Following this, MnCl 2 , to a final concentration of 1 mM (dephosphorylation buffer), and then 2 U/μL Lambda Protein Phosphatase (LPP) (NEB) were added, and the sample was incubated at 37 °C for up to 1 h. Peptide dephosphorylation was again monitored by recording the CD signal at 222 nm against time, with time points taken every second for the duration of the reaction. ..

    Article Title: Multivalent coiled-coil interactions enable full-scale centrosome assembly and strength
    Article Snippet: .. Ni-NTA-bound SPD-5 was incubated for 1 hr at room temperature in dephosphorylation buffer (1X PMP buffer (NEB) + 1mM MnCl 2 , + 40,000 U of lambda phosphatase (400,000 units/mL, NEB). ..

    Article Title: Cell cycle-specific loading of condensin I is regulated by the N-terminal tail of its kleisin subunit
    Article Snippet: .. The washed beads were incubated with 10 μl of dephosphorylation buffer (1× NEB buffer for PMP supplemented with 1 mM MnCl 2 ) with or without 100U λProtein Phosphatase (P0753S, λPPase) (New England Biolabs). ..

    Article Title: ZC3H14 facilitates backsplicing by binding to exon-intron boundary and 3' UTR.
    Article Snippet: After washing with NLB once, beads were incubated with 4 U TURBO DNase (Thermo) and 0.5 U RNase I in NDB buffer (50 mM Tris-HCl, pH 7.4, 100 mM NaCl, 0.1% Tween-20) at 37 C for 3 min. Beads were then cooled on ice for 2 min and washed once with HSB buffer (50 mM Tris-HCl, pH 7.4, 1 M NaCl, 1% IGEPAL CA-630, 0.1% SDS, 1 mM EDTA) and once with NDB buffer. .. For dephosphorylation, beads were resuspended in 20 ml dephosphorylation buffer (10 mL 23PNK buffer, 0.5 mL RNase inhibitor, 1 mL b-mercaptoethanol, 1 mL 10U/L T4 PNK (NEB) and 7.5 mL RNase-free H2O) at 37 C for 20 min. After one 5 min wash in HSB buffer and two 5 min washes in NDB buffer, beads were then ligated to an s-oligo with T4 RNA ligase I (NEB) at 25 C for 60 min. After free s-oligo washing away, the 3’-phosphate of the s-oligo was dephosphorylated with T4 PNK at 37 C for 20 min. After washing once with HSB buffer and once with NDB buffer, the complex was treated with proteinase K at 37 C for 15 min, and the crosslinked RNA was purified with the Oligo Clean & Concentrator kit (Zymo Research). .. The purified RNA was reverse transcribed with SuperScript III First-Strand Synthesis System (Invitrogen).

    Article Title: TORC pathway intersects with a calcium sensor kinase network to regulate potassium sensing in Arabidopsis .
    Article Snippet: .. The beads were washed twice with the extraction buffer and once with 1 × dephosphorylation buffer provided in a lambda protein phosphatase package (λ- PPase, New England Biolabs). ..

    Synthesized:

    Article Title: Polyglycine-mediated aggregation of FAM98B disrupts tRNA processing in GGC repeat disorders
    Article Snippet: .. 2.5 μg of total RNA was dephosphorylated with 10 units of T4 polynucleotide kinase (NEB) in dephosphorylation buffer (700 mM bis-tris, 100 mM MgCl 2 , 50 mM DTT, pH 6) at 37°C for 30 minutes, then fractionated using an RNA Clean & Concentrator-5 kit (Zymo) according to the manufacturer’s instructions. cDNA was synthesized from 20 ng of the small RNA fraction using an OTTR kit (Karnateq) according to the manufacturer’s instructions. .. Following cDNA synthesis, reactions were combined with 1 μL RNase A (ThermoScientific) and 1 μL thermostable RNase H (NEB), incubated at 50°C for 10 minutes, further combined with 1 μL proteinase K (NEB) and 30 μL cDNA stop solution (50 mM tris-HCl, 20 mM EDTA, 0.1% SDS, pH 7.4), incubated at 50°C for 10 minutes, and denatured at 95°C for 5 minutes. cDNA was purified using an Oligo Clean & Concentrator kit (Zymo), mixed 1:1 with 2X Gel Loading Buffer II (Ambion) and subjected to denaturing 8% polyacrylamide gel electrophoresis.

    Concentration Assay:

    Article Title: Digenic inheritance involving a muscle-specific protein kinase and the giant titin protein causes a skeletal muscle myopathy
    Article Snippet: The cells were lysed for 15 min on ice in 1× NEBuffer Pack for Protein Metallophosphatases (50 mM HEPES (pH 7.5), 100 mM NaCl, 2 mM DTT, 0.01% Brij 35; New England Biolabs) supplemented with 1 mM MnCl 2 , 1% Triton X-100, 1× Halt Protease Inhibitor Cocktail (Thermo Fisher Scientific), 4 mM β-glycerophosphate, 10 mM sodium pyrophosphate, 4 mM sodium orthovanadate and 2 mM sodium fluoride. .. Insoluble material was pelleted at 4 °C for 15 min at 15,700 g . The supernatants were divided into three reactions (U, untreated; N, no phosphatase; P, phosphatase) and combined 1:1 with dephosphorylation buffer (1× NEBuffer pack for protein metallophosphatases, 1 mM MnCl 2 ) alone (U, N) or with NEB lambda protein phosphatase (P; final concentration 6,667 units ml −1 ). ..

    Article Title: Rational Design of Phosphorylation-Responsive Coiled Coil-Peptide Assemblies
    Article Snippet: .. Following this, MnCl 2 , to a final concentration of 1 mM (dephosphorylation buffer), and then 2 U/μL Lambda Protein Phosphatase (LPP) (NEB) were added, and the sample was incubated at 37 °C for up to 1 h. Peptide dephosphorylation was again monitored by recording the CD signal at 222 nm against time, with time points taken every second for the duration of the reaction. ..

    Purification:

    Article Title: ZC3H14 facilitates backsplicing by binding to exon-intron boundary and 3' UTR.
    Article Snippet: After washing with NLB once, beads were incubated with 4 U TURBO DNase (Thermo) and 0.5 U RNase I in NDB buffer (50 mM Tris-HCl, pH 7.4, 100 mM NaCl, 0.1% Tween-20) at 37 C for 3 min. Beads were then cooled on ice for 2 min and washed once with HSB buffer (50 mM Tris-HCl, pH 7.4, 1 M NaCl, 1% IGEPAL CA-630, 0.1% SDS, 1 mM EDTA) and once with NDB buffer. .. For dephosphorylation, beads were resuspended in 20 ml dephosphorylation buffer (10 mL 23PNK buffer, 0.5 mL RNase inhibitor, 1 mL b-mercaptoethanol, 1 mL 10U/L T4 PNK (NEB) and 7.5 mL RNase-free H2O) at 37 C for 20 min. After one 5 min wash in HSB buffer and two 5 min washes in NDB buffer, beads were then ligated to an s-oligo with T4 RNA ligase I (NEB) at 25 C for 60 min. After free s-oligo washing away, the 3’-phosphate of the s-oligo was dephosphorylated with T4 PNK at 37 C for 20 min. After washing once with HSB buffer and once with NDB buffer, the complex was treated with proteinase K at 37 C for 15 min, and the crosslinked RNA was purified with the Oligo Clean & Concentrator kit (Zymo Research). .. The purified RNA was reverse transcribed with SuperScript III First-Strand Synthesis System (Invitrogen).

    Extraction:

    Article Title: TORC pathway intersects with a calcium sensor kinase network to regulate potassium sensing in Arabidopsis .
    Article Snippet: .. The beads were washed twice with the extraction buffer and once with 1 × dephosphorylation buffer provided in a lambda protein phosphatase package (λ- PPase, New England Biolabs). ..



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    Image Search Results


    Journal: Methods (San Diego, Calif.)

    Article Title: PAR-CLIP and streamlined small RNA cDNA library preparation protocol for the identification of RNA binding protein target sites

    doi: 10.1016/j.ymeth.2016.11.009

    Figure Lengend Snippet:

    Article Snippet: Dephosphorylation buffer or 1× NEB Buffer 3 , 50 mM Tris-HCl, pH 7.9.

    Techniques: De-Phosphorylation Assay